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Algorithms in bioinformatics : 5th international workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005 : proceedings
- Author / Creator
- Conferences
- WABI (Workshop) (5th : 2005 : Palma de Mallorca, Spain)
- Available as
- Online
- Physical
Details
Checking for availability...
- Creator
- Rita Casadio, Gene Myers (eds.)
- Format
- Books
- Language
- English
- Contributors
- Publication
-
- Berlin ; New York : Springer, [2005]
- ©2005
- Series
- Physical Details
-
- x, 436 pages : illustrations ; 24 cm
- ISBNs
- 9783540290087, 3540290087
- OCLC
- ocm61882163
- Includes bibliographical references and index.
- Also issued online.
- Spectral clustering gene ontology terms to group genes by function / Nora Speer, Christian Spieth and Andreas Zell -- Dynamic De-Novo prediction of microRNAs associated with cell conditions : a search pruned by expression / Chaya Ben-Zaken Zilberstein and Michal Ziv-Ukelson -- Clustering gene expression series with prior knowledge / Laurent Brehelin -- A linear time biclustering algorithm for time series gene expression data / Sara C. Madeira and Arlindo L. Oliveira -- Time-window analysis of developmental gene expression data with multiple genetic backgrounds / Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. Chamovitz and Benny Chor -- A lookahead branch-and-bound algorithm for the maximum quartet consistency problem / Gang Wu, Jia-Huai You and Guohui Lin -- Computing the quartet distance between trees of arbitrary degree / Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen and Martin Randers -- Using semi-definite programming to enhance supertree resolvability / Shlomo Moran, Satish Rao and Sagi Snir -- An efficient reduction from constrained to unconstrained maximum agreement subtree / Z. S. Peng and H. F. Ting -- Pattern identification in biogeography / Ganeshkumar Ganapathy, Barbara Goodson, Robert Jansen, Vijaya Ramachandran and Tandy Warnow -- On the complexity of several haplotyping problems / Rudi Cilibrasi, Leo van Iersel, Steven Kelk and John Tromp -- A hidden Markov technique for haplotype reconstruction / Pasi Rastas, Mikko Koivisto, Heikki Mannila and Esko Ukkonen -- Algorithms for imperfect phylogeny haplotyping (IPPH) with a single homoplasy or recombination event / Yun S. Song, Yufeng Wu and Dan Gusfield -- A faster algorithm for detecting network motifs / Sebastian Wernicke -- Reaction motifs in metabolic networks / Vincent Lacroix, Cristina G. Fernandes and Marie-France Sagot -- Reconstructing metabolic networks using interval analysis / Warwick Tucker and Vincent Moulton -- A 1.375-approximation algorithm for sorting by transpositions / Isaac Elias and Tzvika Hartman -- A new tight upper bound on the transposition distance / Anthony Labarre -- Perfect sorting by reversals is not always difficult / Severine Berard, Anne Bergeron, Cedric Chauve and Christophe Paul -- Minimum recombination histories by branch and bound / Rune B. Lyngso, Yun S. Song and Jotun Hein -- A unifying framework for seed sensitivity and its application to subset seeds / Gregory Kucherov, Laurent Noe and Mikhail Roytberg -- Generalized planted (l,d)-motif problem with negative set / Henry C. M. Leung and Francis Y. L. Chin -- Alignment of tandem repeats with excision, duplication, substitution and indels (EDSI) / Michael Sammeth, Thomas Weniger, Dag Harmsen and Jens Stoye -- The Peres-Shields order estimator for fixed and variable length Markov models with applications to DNA sequence similarity / Daniel Dalevi and Devdatt Dubhashi -- Multiple structural RNA alignment with Lagrangian relaxation / Markus Bauer, Gunnar W. Klau and Knut Reinert -- Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons / Pankaj K. Agarwal, Yonatan Bilu and Rachel Kolodny -- Ortholog clustering on a multipartite graph / Akshay Vashist, Casimir Kulikowski and Ilya Muchnik -- Linear time algorithm for parsing RNA secondary structure / Baharak Rastegari and Anne Condon -- A compressed format for collections of phylogenetic trees and improved consensus performance / Robert S. Boyer, Warren A. Hunt, Jr. and Serita M. Nelesen -- Optimal protein threading by cost-splitting / Philippe Veber, Nicola Yanev, Rumen Andonov and Vincent Poirriez -- Efficient parameterized algorithm for biopolymer structure-sequence alignment / Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu and Liming Cai -- Rotamer-pair energy calculations using a Trie data structure / Andrew Leaver-Fay, Brian Kuhlman and Jack Snoeyink -- Improved maintenance of molecular surfaces using dynamic graph connectivity / Eran Eyal and Dan Halperin -- The main structural regularities of the sandwich proteins / Alexander Kister -- Discovery of protein substructures in EM maps / Keren Lasker, Oranit Dror, Ruth Nussinov and Haim Wolfson
Subjects
- Bioinformatics -- Mathematics -- Congresses.
- Algorithms -- Congresses.
- Computational Biology -- congresses.
Medical Subject Heading
- Algorithms -- congresses.
Medical Subject Heading
- Sequence Analysis -- congresses.
Medical Subject Heading